Sökning: "Caryophyllaceae"

Visar resultat 6 - 10 av 18 avhandlingar innehållade ordet Caryophyllaceae.

  1. 6. Disentangling the Reticulate History of Polyploids in Silene (Caryophyllaceae)

    Författare :Magnus Popp; Bengt Oxelman; Magnus Lidén; Jeff J. Doyle; Uppsala universitet; []
    Nyckelord :NATURVETENSKAP; NATURAL SCIENCES; Biology; Silene; Sileneae; polyploidy; low copy nuclear DNA; RNA polymerase; RPA2; RPB2; RPD2; internal transcribed spacer; rps16; psbE-petL; concerted evolution; reticulate evolution; lineage sorting; Biologi; Biology; Biologi;

    Sammanfattning : DNA sequences from the rps16 intron and the psbE-petL spacer from the chloroplast genome, the ribosomal nuclear ITS region, and introns from the low copy nuclear genes RPA2, RPB2, RPD2a and RPD2b, are in different combinations used to infer phylogenetic relationships in Sileneae (Caryophyllaceae). Used in concert, the biparentally inherited nuclear regions are useful to distinguish between paralogy due to allopolyploidy and single gene duplications, respectively, because the latter are not expected to give rise to repeated phylogenetic patterns in potentially unlinked sequence regions. LÄS MER

  2. 7. Phylogenetic Support and Chloroplast Genome Evolution in Sileneae (Caryophyllaceae)

    Författare :Per Erixon; Bengt Oxelman; Sean Graham; Uppsala universitet; []
    Nyckelord :Biology; Phylogenetics; Bayesian inference; Bootstrapping; cpDNA; Sileneae; Interspecific chloroplast recombination; Hybridization; clpP; Positive selection; Extreme substitution rates; Biologi;

    Sammanfattning : Evolutionary biology is dependent on accurate phylogenies. In this thesis two branch support methods, Bayesian posterior probablities and bootstrap frequencies, were evaluated with simulated data and empirical data from the chloroplast genome. LÄS MER

  3. 8. Taxonomy and Reticulate Phylogeny of Heliosperma and Related Genera (Sileneae, Caryophyllaceae)

    Författare :Božo Frajman; Bengt Oxelman; Mats Thulin; Christian Brochmann; Uppsala universitet; []
    Nyckelord :NATURVETENSKAP; NATURAL SCIENCES; Sileneae; Silene; Heliosperma; Atocion; Viscaria; taxonomy; phylogenetics; relative dating; reticulate evolution; chloroplast capture; homoploid hybridisation; BEAST; r8s; PATHd8; Prometheus; RPA2; RPB2; RPD2a; RPD2b; Balkan Peninsula; endemics; Systematics and phylogenetics; Systematik och fylogeni;

    Sammanfattning : Heliosperma (nom. cons prop.) comprises 15—20 taxa, most of them endemic to the Balkan Peninsula. DNA sequences from the chloroplast (rps16 intron, psbE-petG spacer) and the nuclear genome (ITS and four putatively unlinked RNA polymerase genes) are used to elucidate phylogenetic relationships within Heliosperma, and its position within Sileneae. LÄS MER

  4. 9. Patterns of geographic variation in Silene section Elisanthe (Caryophyllaceae): hybridization and migrational history

    Författare :Louise Hathaway; Biologiska institutionen; []
    Nyckelord :NATURVETENSKAP; NATURAL SCIENCES; chemotaxonomy. Physiology of nonvascular plants; phytogeography; morphology; outbreeding depression; Systematic botany; taxonomy; ITS; fitnes; inbreeding depression; AFLP; PCR-RFLP; cpDNA; gene flow; postglacial migration; geographic variation; hybridization; Silene latifolia; Silene section Elisanthe; Silene dioica; Systematisk botanik; taxonomi; morfologi; kemotaxonomi. Växters fysiologi inte kärlväxter .;

    Sammanfattning : Large-scale patterns of genetic variation in chloroplast (cp) and nuclear DNA in the widespread European herb species Silene latifolia and S. dioica were investigated using cpPCR-RFLPs, non-coding cpDNA sequences, AFLPs and sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA (rDNA). LÄS MER

  5. 10. Phylogenetic Relationships, Biogeography and Species Delimitation: A case study on southern African Silene (Caryophyllaceae)

    Författare :Ntwai A. Moiloa; Göteborgs universitet; []
    Nyckelord :NATURVETENSKAP; NATURAL SCIENCES; Elisanthe; Illumina sequencing; Multispecies coalescent model; NGS; Phylogenetics; Phylogeography; species-trees; STACEY; target-capture;

    Sammanfattning : The primary aim of this thesis was to explore the phylogenetic relationships and historical biogeography of African members of the plant genus Silene (Caryophyllaceae), with special focus on the eight native southern African taxa. Three loci (the nuclear ribosomal internal transcribed spacer region, and the rps16 and matK regions from the plastid genome) generated using traditional Sanger sequencing were used to infer the phylogenetic positions of African taxa, while sequence data from 28 low copy nuclear loci were generated using the target capture method to explore shallow phylogenetic relationships within southern African taxa. LÄS MER